The challenges
6 challenges, grown from the needs you submitted. Rank the 3 you want to work on.
We do our best to follow everyone’s wishes, but voting guarantees neither a place in one of your preferred challenges nor a seat at the hackathon.
Sign in to rank the challenges
- #1Physiology you can trust: tracking change between visitsBetween two consultations, is a patient getting better or quietly getting worse?
More
Between two consultations, is a patient getting better or quietly getting worse? Wearables and phones stream heart rhythm, sleep and movement around the clock; the hard part is trusting them and telling stress from a coffee, a run or a bad night. The team will turn these everyday signals into a measure of change from each person's own baseline, decide who should hear about a meaningful shift and when, and keep alert fatigue out of the loop. Open wearable datasets, foundation models for physiological signals and language models are on the table, along with the outline of a first study with patients. One lead worth chasing: the body clock as an early signal.
Resources
Data- Wearables and phone sensing
- Sensitive data handling
- WESAD ↗
- Wearable stress and structured exercise sessions (PhysioNet, ODC-By) ↗
- MMASH — 24 h heart signals, actigraphy, sleep, cortisol and melatonin (PhysioNet, ODbL) ↗
- LifeSnaps — 4 months of Fitbit data and surveys (Zenodo, CC BY 4.0) ↗
- PMData — 5 months of Fitbit data and self-reports (Simula) ↗
- BUT PPG — smartphone PPG with quality labels (PhysioNet, CC BY 4.0) ↗
- PPG-DaLiA — wrist PPG with motion during daily activities (UCI) ↗
- Wearable exam stress — real-world stress (PhysioNet, ODC-By) ↗
- Nurse stress — wristband data on hospital shifts (Dryad, CC0) ↗
- Autonomic Aging — HRV across ages incl. older adults (PhysioNet, ODbL) ↗
- PTB-XL — 12-lead ECG database (PhysioNet) ↗
- GLOBEM — multi-year phone and wearable data with weekly depression surveys (PhysioNet, credentialed access) ↗
Technical- Speech models
- Data platform and governance
- Lab equipment
- Video / vision models
- Language-model endpoints
- Polar H10 straps ↗
- NeuroKit2 — physiological signal processing and quality ↗
- HeartPy — heart-rate analysis for PPG and ECG ↗
- PaPaGei — open foundation models for optical physiological signals (BSD-3) ↗
- pyVHR — camera-based heart rate (GPL-3.0) ↗
Skills sought
- #2Beyond the human eye: behaviour from video and audioSome of the most telling signs in mental health last less than a second: a micro-movement, a glance held too long, the moment words and face tell different stories.
More
Some of the most telling signs in mental health last less than a second: a micro-movement, a glance held too long, the moment words and face tell different stories. Trained clinicians catch some of them; coding them by hand is slow and varies between coders. Here, video and audio of play, conversation and therapy become behavioural signatures precise enough to follow one person across sessions, a step towards precision and personalised medicine. Over two days, vision-language models, audio-visual models and pose tracking meet open footage and human coders, and clinicians question and correct the labels in plain language. Leads: change across sessions, movement patterns shared by overlapping conditions.
Resources
DataTechnical- Video / vision models
- Speech models
- Language-model endpoints
- Anonymization tools
- LISBET — social behaviour transformer, Bellone lab (academic non-commercial) ↗
- OpenFace — facial action units, gaze, head pose ↗
- DeepFace — facial affect analysis ↗
- Wav2Vec2 / HuBERT — speech representations ↗
- EmoBox — speech emotion recognition toolkit ↗
- Label Studio — annotation platform ↗
- Kineo — calibration-free 3D motion capture from ordinary cameras (research use only) ↗
Skills sought
- #3What speech reveals: memory and mood in clinical audioA recorded memory, a therapy session, a parent playing with a child: each carries pauses, prosody and word choices that say something about memory and mood, and no clinician can score them at scale.
More
A recorded memory, a therapy session, a parent playing with a child: each carries pauses, prosody and word choices that say something about memory and mood, and no clinician can score them at scale. How much of that signal can be captured from French clinical audio, compared over time, and shared without exposing the speaker? The team will build the pieces: who spoke when, voice and language markers, and anonymisation that protects identity while keeping the signal. Speech foundation models, language models and on-device processing work on open corpora, and the two days end with a plan to bring them to the clinic. Still wide open: markers that survive a phone call.
Resources
Data- Sensitive data handling
- Brain signals and imaging
- Wearables and phone sensing
- Common Voice FR — French read speech (Mozilla, open) ↗
- Multilingual LibriSpeech French — audiobook speech (OpenSLR 94, CC BY 4.0) ↗
- VoxPopuli — French parliamentary speech (Meta, CC0) ↗
- VoxConverse — who-spoke-when benchmark (CC BY 4.0, research) ↗
- AMI Meeting Corpus — multi-speaker, overlapping speech ↗
- CaFE — Canadian French emotional speech (CC BY-NC-SA 4.0) ↗
- RAVDESS — emotional speech and song (CC BY-NC-SA 4.0) ↗
- CHILDES French — child–parent speech (TalkBank, ground rules apply) ↗
- DementiaBank — speech in dementia (TalkBank, membership required) ↗
- EATD-Corpus — depression speech, Mandarin ↗
- DAIC-WOZ — depression interviews, English (EULA required) ↗
Technical- Speech models
- Language-model endpoints
- Video / vision models
- Lab equipment
- Data platform and governance
- faster-whisper — fast Whisper transcription (MIT) ↗
- WhisperX — word timings and diarisation on Whisper (BSD-2) ↗
- NVIDIA Canary-1B-v2 — multilingual ASR incl. French (CC BY 4.0) ↗
- NVIDIA Parakeet-TDT-0.6B-v3 — multilingual ASR (CC BY 4.0) ↗
- pyannote.audio — who spoke when (MIT; accept model terms on Hugging Face) ↗
- openSMILE — acoustic features (audEERING research licence, non-commercial) ↗
- VoicePrivacy Challenge 2024 — voice anonymisation baselines ↗
- SA-toolkit — speaker anonymisation in Python (Apache-2.0) ↗
- Presidio — text de-identification (MIT) ↗
- Vosk — on-device speech recognition incl. French ↗
- CamemBERT — French language model ↗
Skills sought
- #4From camera to cortex: everyday markers, anchored in the brainPicture a frail patient at home, a phone propped on the table, and measures of gaze, pupil and gait as good as a lab's.
More
Picture a frail patient at home, a phone propped on the table, and measures of gaze, pupil and gait as good as a lab's. Eye trackers, motion capture and EEG rarely leave the lab, and many patients can rarely come to them. This challenge brings lab-grade measures to ordinary cameras, checks them against lab references, and anchors them in brain activity, with EEG kept clean while people talk and walk and pipelines that hold across sites. Markerless tracking, EEG foundation models and open EEG and imaging data are the starting kit for a first prototype and a study plan. The open question at its heart: what neurophysiology/imaging adds beyond the camera.
Resources
Data- Brain signals and imaging
- Wearables and phone sensing
- Sensitive data handling
- LEMON and OpenNeuro ↗
- MPIIFaceGaze — webcam gaze dataset (research use) ↗
- AddBiomechanics — motion-capture reference data ↗
- Simultaneous EEG–fMRI, neurofeedback (OpenNeuro ds002336, CC0) ↗
- EEG while walking — Audiocue (OpenNeuro ds001971) ↗
- EEGEyeNet — simultaneous EEG and eye tracking (OSF) ↗
- Healthy Brain Network — EEG, eye tracking, MRI (data use terms) ↗
- Dreem Open Datasets — headband vs lab sleep EEG ↗
- TUH EEG Corpus — clinical EEG (registration required) ↗
- NEMAR — open EEG/MEG repository ↗
Technical- Speech models
- Language-model endpoints
- Data platform and governance
- Video / vision models
- Lab equipment
- OptiTrack and eye trackers ↗
- OpenCap — motion analysis from phone video, validated against motion capture (Apache-2.0) ↗
- Pose2Sim — 3D markerless pose from several cameras (BSD-3) ↗
- MMPose / RTMPose — pose estimation (Apache-2.0) ↗
- MediaPipe Pose Landmarker ↗
- OpenFace — gaze, head pose, facial action units (non-commercial academic) ↗
- WebGazer.js — webcam eye tracking in the browser (check licence) ↗
- Lab Streaming Layer — synchronise EEG, gaze, audio and motion ↗
- MNE-Python — EEG/MEG analysis (BSD-3) ↗
- pyprep — EEG preprocessing (PREP pipeline) ↗
- autoreject — automated EEG artefact rejection ↗
- Braindecode — deep learning on EEG (BSD-3) ↗
- LaBraM — EEG foundation model (MIT) ↗
- fMRIPrep — fMRI preprocessing (Apache-2.0) ↗
- FastSurfer — fast MRI segmentation (Apache-2.0) ↗
- SynthSeg — segmentation for any T1 scan (FreeSurfer) ↗
- Lead-DBS — deep brain stimulation electrode localisation ↗
- BIDS — standard layout for brain data ↗
Skills sought
- #5Pain, pleasure and touch: one readout from mice to humansCan we read pain and pleasure the same way in a mouse and in a person, without touching either?
More
Can we read pain and pleasure the same way in a mouse and in a person, without touching either? It matters for both: handling stresses animals, while rating scales miss what patients cannot put into words. The aim is one hands-off readout of pain, pleasure and social behaviour that travels across species, from pose, face and movement on camera, with touch delivered by robots and behaviour discovered with as little human bias as possible. Pretrained pose models, behaviour transformers and vision-language models start from open video; the two days end with a prototype and the outline of a translational study. Barely explored so far: how sight and sound reshape touch.
Resources
Data- Animal recordings
- Sensitive data handling
- Wearables and phone sensing
- Brain signals and imaging
- CalMS21 — mouse social behaviour dataset (Caltech, CC BY 4.0) ↗
- MABe22 — multi-agent behaviour benchmark ↗
Technical- Video / vision models
- Lab equipment
- Speech models
- Language-model endpoints
- Data platform and governance
- DeepLabCut — markerless pose estimation (LGPL-3.0) ↗
- SuperAnimal-TopViewMouse — pretrained mouse pose model (DeepLabCut model zoo) ↗
- SLEAP — multi-animal pose tracking (BSD-3-Clear) ↗
- Keypoint-MoSeq — behaviour motif discovery (non-commercial academic) ↗
- B-SOiD — unsupervised behaviour discovery (GPL-3.0) ↗
- SimBA — supervised behaviour classification (academic use only) ↗
- LISBET — social behaviour transformer, Bellone lab (academic non-commercial) ↗
- QuPath — tissue image analysis (GPL-3.0) ↗
- Cellpose — cell and structure segmentation (BSD-3) ↗
ScientificSkills sought
- #6Interventions that measure: XR, games and smart toysWhat if every moment of play could also be a measurement?
More
What if every moment of play could also be a measurement? A game in augmented reality, a virtual scene for practising social cues, a toy that responds to how a child plays: each can train attention, social skills or emotion recognition, and each can record gaze, movement, choices and physiology along the way, so clinicians see more than a final score and can tailor the next session. Headsets with built-in eye tracking, language-model characters and sensor-equipped toys are within reach for a two-day build, together with a plan to test the best idea with patients. Worth a first look: augmented-reality cues for attention after stroke.
Resources
Data- Wearables and phone sensing
- Brain signals and imaging
- Sensitive data handling
- GazeBaseVR — eye tracking recorded in VR (figshare, CC BY 4.0) ↗
Technical- Data platform and governance
- Video / vision models
- Lab equipment
- Speech models
- Language-model endpoints
- OpenXR — cross-headset XR standard ↗
- Godot — open game engine with XR support (MIT) ↗
- A-Frame — VR/AR in the browser via WebXR (MIT) ↗
- Unity XR Interaction Toolkit — examples ↗
- jsPsych — browser-based tasks for gamified assessment (MIT) ↗
- PsychoPy — experiment and task builder (GPL-3.0) ↗
- Pupil Labs — open eye tracking (LGPL-3.0) ↗
- Tobii Pro Glasses 3 — wearable eye tracking (commercial) ↗
- Lab Streaming Layer — sync gaze, physiology and in-game events ↗
- Arduino — open hardware for sensor toys ↗
- ESP32 Arduino core — wireless microcontroller (LGPL-2.1) ↗
- llama.cpp — on-device language model (MIT) ↗
- whisper.cpp — on-device speech recognition (MIT) ↗
- Piper — on-device speech synthesis (MIT) ↗
Skills sought
- 1Physiology you can trust: tracking change between visits
- 2Beyond the human eye: behaviour from video and audio
- 3What speech reveals: memory and mood in clinical audio
- 4From camera to cortex: everyday markers, anchored in the brain
- 5Pain, pleasure and touch: one readout from mice to humans
- 6Interventions that measure: XR, games and smart toys
